A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
/home/amsung/mapping/mapped
General Statistics
| Sample Name | Total reads | Aligned | Aligned | Uniq aligned | Uniq aligned | Multimapped |
|---|---|---|---|---|---|---|
| GSM461177 | 1.1M | 0.9M | 87.6% | 0.9M | 82.2% | 0.1M |
| GSM461180 | 1.2M | 1.0M | 79.8% | 0.9M | 75.6% | 0.1M |
STAR
Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635
Summary Statistics
Summary statistics from the STAR alignment
| Sample Name | Total reads | Aligned | Aligned | Uniq aligned | Uniq aligned | Multimapped | Avg. read len | Avg. mapped len | Splices | Annotated splices | GT/AG splices | GC/AG splices | AT/AC splices | Non-canonical splices | Mismatch rate | Del rate | Del len | Ins rate | Ins len |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GSM461177 | 1.1M | 0.9M | 87.6% | 0.9M | 82.2% | 0.1M | 74.0bp | 73.6bp | 0.1M | 0.1M | 0.1M | 0.0M | 0.0M | 0.0M | 0.8% | 0.0% | 1.6bp | 0.0% | 1.4bp |
| GSM461180 | 1.2M | 1.0M | 79.8% | 0.9M | 75.6% | 0.1M | 74.0bp | 72.6bp | 0.1M | 0.1M | 0.1M | 0.0M | 0.0M | 0.0M | 2.2% | 0.0% | 1.4bp | 0.0% | 1.3bp |