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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.28

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-07-21, 13:12 +03 based on data in: /home/amsung/mapping/mapped

        General Statistics

        Showing 2/2 rows and 2/6 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimapped
        GSM461177
        1.1M
        0.9M
        87.6%
        0.9M
        82.2%
        0.1M
        GSM461180
        1.2M
        1.0M
        79.8%
        0.9M
        75.6%
        0.1M

        STAR

        Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

        Summary Statistics

        Summary statistics from the STAR alignment

        Showing 2/2 rows and 10/19 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimappedAvg. read lenAvg. mapped lenSplicesAnnotated splicesGT/AG splicesGC/AG splicesAT/AC splicesNon-canonical splicesMismatch rateDel rateDel lenIns rateIns len
        GSM461177
        1.1M
        0.9M
        87.6%
        0.9M
        82.2%
        0.1M
        74.0bp
        73.6bp
        0.1M
        0.1M
        0.1M
        0.0M
        0.0M
        0.0M
        0.8%
        0.0%
        1.6bp
        0.0%
        1.4bp
        GSM461180
        1.2M
        1.0M
        79.8%
        0.9M
        75.6%
        0.1M
        74.0bp
        72.6bp
        0.1M
        0.1M
        0.1M
        0.0M
        0.0M
        0.0M
        2.2%
        0.0%
        1.4bp
        0.0%
        1.3bp

        Alignment Scores

        Created with MultiQC

        MultiQC v1.28 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.